Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., RluA family pseudouridine synthase from Paraburkholderia sabiae LMG 24235

 Score =  240 bits (613), Expect = 4e-68
 Identities = 146/327 (44%), Positives = 194/327 (59%), Gaps = 17/327 (5%)

Query: 10  TVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQA 69
           TV     G+RLD+ +A++F +FSRSRL+ W+   ++ V+G      +   +G  +  V  
Sbjct: 84  TVPSELAGERLDKVLAKVFPEFSRSRLQSWIEAQRVRVDGQPAKIRQPVPLGASIELVPD 143

Query: 70  ELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAE- 128
            L ++  +  + +PL+IVYEDD ++VINKP   VVHP AG    TVLN LL  Y   A  
Sbjct: 144 LLPEQLAFTPEPVPLDIVYEDDALVVINKPAGLVVHPAAGNWSGTVLNGLLHRYGDAAAG 203

Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGMIDKP 188
           +PRAGIVHRLDK+T+GLMVVA+T+ AQT LVR LQ R V R Y A+V G M   G ID P
Sbjct: 204 LPRAGIVHRLDKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPEDGTIDAP 263

Query: 189 IGRHSTKRTLMSV--SPMGKHAVTHYRVAE----HFREHTRLRLRLETGRTHQIRVHMAY 242
           IGR   +RT M+V     GK A TH+R  +      +  + +   LETGRTHQIRVH A+
Sbjct: 264 IGRDPRERTRMAVVTGASGKPARTHFRRIDSTVWERQPVSAIHCDLETGRTHQIRVHCAH 323

Query: 243 LQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
           + HPLLGD  Y GRAR        +  +   F RQALHA  L   HP TG  +++ A  P
Sbjct: 324 IGHPLLGDPVY-GRAR----GKRSVAPLPGGFARQALHAWRLALVHPKTGRTMQWRADPP 378

Query: 303 DDMVEMTLAL-----REDAKLNRTEEY 324
           DD+ E++ AL     RED   +  ++Y
Sbjct: 379 DDIAELSEALGLGREREDEYEDDYDDY 405