Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., RNA pseudouridine synthase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  177 bits (450), Expect = 3e-49
 Identities = 111/299 (37%), Positives = 167/299 (55%), Gaps = 14/299 (4%)

Query: 19  RLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQ-AELEDEQRW 77
           RLD+ + +   + +R++L+  +    + VN   + K   KV   +VITV  AE   +   
Sbjct: 32  RLDKFLMDRLPNVTRNKLQGAIRSEAVQVNQKPV-KVSYKVKPLDVITVTLAEAPRDTDI 90

Query: 78  EAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAE----VPRAG 133
             +++PL+I+YEDD+++++NK    VVHP     + T++NAL +H   +        R G
Sbjct: 91  VPENIPLDIIYEDDELLLVNKAAGMVVHPAYNNWNGTLVNALTYHLQNLPTHRNGEGRPG 150

Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGT-MTAGGMIDKPIGRH 192
           +VHR+DKDT+GL+V+AKT  +   L +      + R Y A+V G      G I   +GR 
Sbjct: 151 LVHRIDKDTSGLLVIAKTDYSMAYLAKQFFDHSIERTYYALVWGVPKEQKGTITGHVGRS 210

Query: 193 STKRTLMSVSPMG---KHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLG 249
           +  R +M+V P G   KHAVTHY+V   FR  + ++  LETGRTHQIR HM ++ HPL  
Sbjct: 211 AKDRKVMAVYPAGDYGKHAVTHYKVLRSFRYVSLVQCNLETGRTHQIRAHMKHIGHPLFS 270

Query: 250 DTAYGGRA---RIPKGATEELTE-MIRDFDRQALHAVMLKFEHPVTGEELEFHAPVPDD 304
           D  YGG      +P G  +   E   +   RQALHA  L F HP T E ++F++ +P+D
Sbjct: 271 DATYGGDKILYGMPNGTYKSFVENAFKLMPRQALHAKSLGFLHPDTKEFMQFNSDLPED 329