Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  227 bits (578), Expect = 4e-64
 Identities = 127/297 (42%), Positives = 180/297 (60%), Gaps = 20/297 (6%)

Query: 17  GQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAE-LEDEQ 75
           G R+D+A+A+L  +FSRS L++ +++G + + G  + KP  ++  G+ + V+    +  Q
Sbjct: 32  GWRIDRALAQLIPEFSRSYLQQLMVDGAVEMRGTALRKPSARIAAGDRLAVELRPTQQAQ 91

Query: 76  RWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIV 135
            +  Q + L++VYED D++VI KP   VVHP AG    T+LN LL H++  A +PRAGIV
Sbjct: 92  AFVPQAMALDVVYEDADLLVIQKPAGLVVHPAAGHWTGTLLNGLLAHHAGAASLPRAGIV 151

Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTM--TAGGMIDKPIGRHS 193
           HRLDKDT+GLM+V K+  A   LVRA+  R+V R+Y A+  G     A   +D+PIGR  
Sbjct: 152 HRLDKDTSGLMLVGKSRQAVEALVRAIAAREVNRQYLALAHGRWQGAAEKGVDQPIGRDV 211

Query: 194 TKRTLMSV----SPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPLLG 249
             R  M+V    + +GK A T  R+ +   +   +  +L TGRTHQIRVHMA+L HPL+ 
Sbjct: 212 HNRLRMAVVRPDTGIGKAAQTTIRLLDTSDQACLVACKLHTGRTHQIRVHMAWLGHPLVA 271

Query: 250 DTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVPDDMV 306
           DT YGGRA             +   DRQALHA  L   HP+TGE L F +P P D++
Sbjct: 272 DTLYGGRA-------------LWGIDRQALHAARLSLRHPITGEPLAFRSPPPPDLL 315