Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 215 a.a., Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  121 bits (303), Expect = 2e-32
 Identities = 84/231 (36%), Positives = 118/231 (51%), Gaps = 32/231 (13%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDTT 143
           LN ++EDD +IV++KP   +  PG G   +  L+A        A  P A +VHRLD  T+
Sbjct: 4   LNTIHEDDQMIVLDKPAGLLAVPGRGPDKQDCLSA-----RAQARWPDALVVHRLDMATS 58

Query: 144 GLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTM------TAGGMIDKPIGRHSTKRT 197
           GL+V+A+ + AQ +L RA ++R V + Y A+V GT+           ID P+      R 
Sbjct: 59  GLVVMARGIEAQRQLSRAFEQRQVHKRYTAVVAGTLHNPVHDNGWNTIDLPLTIDWPNRP 118

Query: 198 LMSVS-PMGKHAVTHYRVAEHFREHTRLRLRLE--TGRTHQIRVHMAYLQHPLLGDTAYG 254
              VS  +GK +VT +R+A    +    RL LE  TGRTHQ+RVH+  + HP+LGD  Y 
Sbjct: 119 RSIVSAELGKPSVTRWRLAGPATDDHTTRLELEPVTGRTHQLRVHLQAIGHPILGDMLYA 178

Query: 255 ---GRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
               +AR P               R  LHA  L   HP  G  ++FH+  P
Sbjct: 179 TPEQQARAP---------------RLLLHAHQLSLPHPQHGATMDFHSTSP 214