Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., RluA family pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  195 bits (496), Expect = 1e-54
 Identities = 123/305 (40%), Positives = 172/305 (56%), Gaps = 11/305 (3%)

Query: 11  VKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAE 70
           V+  + G RLD+ +A    + SR+R+K  + +G++++    I+    +V  G+   V   
Sbjct: 14  VEPEEAGTRLDRWLALRLPELSRTRIKGLMEDGRVSLEETTISDASLRVKPGQCFVVDVP 73

Query: 71  LEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH----YSPI 126
            +   + E QD+ L +VYED+D+IVI+KP   VVHP  G  D+T++NALL H     + I
Sbjct: 74  PDAPAQPEPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCGESLAGI 133

Query: 127 AEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT-AGGMI 185
             V R GIVHR+DKDT+GL+V AKT  A   L        + R Y A+V GT +   G I
Sbjct: 134 GGVKRPGIVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGEI 193

Query: 186 DKPIGRHSTKRTLMS-VSPMGKHAVTHYRVAEHFR--EHTRLRLRLETGRTHQIRVHMAY 242
           +  IGR+   R  M+ V   GK A+T YRV + F     + +  RL TGRTHQIRVHM  
Sbjct: 194 EGNIGRNPNDRKKMAVVKSGGKPALTRYRVLKSFAGGAVSLVECRLATGRTHQIRVHMTT 253

Query: 243 LQHPLLGDTAYGGRARIPKGAT--EELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAP 300
             HPL+GD  Y GR R  KG     E+   +  F RQALHA +L F HP  G ++ F + 
Sbjct: 254 QGHPLVGDPVY-GRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGFSHPTKGYDVRFESG 312

Query: 301 VPDDM 305
           +P D+
Sbjct: 313 MPLDI 317