Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., RluA family pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  134 bits (336), Expect = 4e-36
 Identities = 101/313 (32%), Positives = 153/313 (48%), Gaps = 33/313 (10%)

Query: 8   TQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITV 67
           T TV + +   RLD+     F       L++WL  G + V+G    K   ++  G++I V
Sbjct: 6   TLTVAEEEAEIRLDRWFKRHFPSVGHGLLEKWLRAGNVRVDGKR-AKSNQRLDAGQIIRV 64

Query: 68  QA-ELEDEQRWEAQDLPLN----------IVYEDDDIIVINKPRDFVVHPGAGQADKTV- 115
                 +    E +  P++          ++Y DD++I +NKP    V  G G ADK + 
Sbjct: 65  PPLPTAEAPPREVRPAPVDEKIARMLQDAVLYMDDEVIALNKPPGLAVQGGTGMADKHLD 124

Query: 116 --LNALLFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEA 173
             L+AL F      +  R  +VHRLDKDT+G++++ +T  A  +L  A + R   + Y A
Sbjct: 125 AWLDALCF------DGGRPKLVHRLDKDTSGVLLLGRTANATAKLAAAFKSRSARKCYWA 178

Query: 174 IVIGT-MTAGGMIDKPIGRHSTK--RTLMSVSPMGKHAVTHYRVAE-HFREHTRLRLRLE 229
           +V G      G ID P+ +   K    +      GKHAVT+YRV +   +    L L   
Sbjct: 179 LVAGVPRYPQGRIDAPLAKLPGKAGEKVAVDKEDGKHAVTYYRVVDATLKRAAWLELEPR 238

Query: 230 TGRTHQIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHP 289
           TGRTHQ+R H   L  P++GD  YGG+  + +G     T + R   +  LHA  ++  HP
Sbjct: 239 TGRTHQLRAHCLLLGTPIMGDGKYGGQDALVEG-----TGVSR---KLHLHARAVRLPHP 290

Query: 290 VTGEELEFHAPVP 302
            TG+ LE  AP+P
Sbjct: 291 RTGKVLEVVAPLP 303