Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  133 bits (335), Expect = 5e-36
 Identities = 102/316 (32%), Positives = 157/316 (49%), Gaps = 26/316 (8%)

Query: 15  QLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAELEDE 74
           + GQR+D  +        +S +   L +G++ VN   I KP  K+  G+ + +      E
Sbjct: 17  EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAE 75

Query: 75  QRWEAQDLPLN--------IVYEDDDIIVINKPRDFVVHPGAGQADKTV--LNALLFHYS 124
           +  EA    L         I+YEDD I+V+NKP    VH G+G +   +  L AL     
Sbjct: 76  REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR---- 131

Query: 125 PIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG-G 183
              E     +VHRLD+DT+G+++VAK   A   L   L+++ + ++Y A+V G   +   
Sbjct: 132 --PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189

Query: 184 MIDKPIGRH--STKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMA 241
            +  P+ ++   +   ++ VS  GK + T ++V E +   T +R    TGRTHQIRVH  
Sbjct: 190 TVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249

Query: 242 YLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPV 301
           Y  HP+  D  YG R        ++LTE      R  LHA  LKF HP TGE +   AP+
Sbjct: 250 YAGHPIAFDDRYGDRE-----FDQQLTEAGTGLKRLFLHAAALKFTHPGTGEVMRIEAPM 304

Query: 302 PDDMVEMTLALREDAK 317
            D+ ++  L +  +AK
Sbjct: 305 -DNALKRCLQVLRNAK 319