Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Erwinia tracheiphila SCR3

 Score =  127 bits (319), Expect = 4e-34
 Identities = 97/322 (30%), Positives = 164/322 (50%), Gaps = 27/322 (8%)

Query: 10  TVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQ- 68
           T+   + GQR+D  +        +S +   L +G++ VN   + KP  K+  G+ + +  
Sbjct: 12  TISADEAGQRIDNFLRTQLKGVPKSMIYRILRKGELRVNKGRV-KPEYKLEAGDEVRIPP 70

Query: 69  ---AELEDE----QRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTV--LNAL 119
              AE E+E    +  +   L   I++EDD ++V+NKP    VH G+G +   +  L AL
Sbjct: 71  LRVAEREEEAVSPKLAKVAALDGAILFEDDHLLVLNKPSGTAVHGGSGLSFGVIEGLRAL 130

Query: 120 LFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTM 179
                P A      +VHRLD+DT+G+++VAK   A   L   L+++ + ++Y A+V G  
Sbjct: 131 ----RPDARFLE--LVHRLDRDTSGILLVAKKRSALRSLHEQLREKGMQKDYLALVKGQW 184

Query: 180 TAG-GMIDKPIGRH--STKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQI 236
            +    +  P+ ++   +   ++ VS  GK + T ++V E +   T ++    TGRTHQI
Sbjct: 185 PSHLKTVQTPLLKNILQSGERVVRVSSEGKPSETRFKVEERYAYATLVKASPVTGRTHQI 244

Query: 237 RVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELE 296
           RVH  +  HP+  D  YG ++   + A   L  +        LHA+ L+F HP TGE + 
Sbjct: 245 RVHTLHAGHPIAFDDRYGEKSFDMQLAGSGLKRLF-------LHALALRFTHPATGEVMR 297

Query: 297 FHAPVPDDMVEMTLALREDAKL 318
             AP+ D++     ALR++A +
Sbjct: 298 VKAPLDDELKGCLQALRKNAPM 319