Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., pseudouridine synthase, RluA family from Enterobacter asburiae PDN3

 Score =  127 bits (320), Expect = 3e-34
 Identities = 97/316 (30%), Positives = 156/316 (49%), Gaps = 27/316 (8%)

Query: 11  VKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQ-- 68
           + +   GQR+D  +        +S +   L +G++ VN   + KP  K+  G+ + +   
Sbjct: 13  IAEDDAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRV-KPEYKLEAGDEVRIPPV 71

Query: 69  --AELEDE----QRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTV--LNALL 120
             AE E+E    +  +   L   I+YEDD I+V+NKP    VH G+G +   +  L AL 
Sbjct: 72  RVAEREEETVSPKLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 131

Query: 121 FHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT 180
                  E     +VHRLD+DT+G+++VAK   A   L   L+++ + ++Y A+V G   
Sbjct: 132 ------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185

Query: 181 AG-GMIDKPIGRH--STKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIR 237
           +   ++  P+ ++   +   ++ VS  GK + T ++V E +   T +R    TGRTHQIR
Sbjct: 186 SHVKVVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYEFATLVRCSPVTGRTHQIR 245

Query: 238 VHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEF 297
           VH  +  HP+  D  YG R    + A   L+ +        LHA  LKF HP TGE +  
Sbjct: 246 VHTQFAGHPIAFDDRYGDREFDKQLAGTGLSRLF-------LHAAALKFTHPNTGEVIRI 298

Query: 298 HAPVPDDMVEMTLALR 313
            AP+ + +      LR
Sbjct: 299 EAPLDEQLKRCLKVLR 314