Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 228 a.a., Pseudouridylate synthases, 23S RNA-specific from Enterobacter asburiae PDN3

 Score =  113 bits (283), Expect = 4e-30
 Identities = 80/226 (35%), Positives = 111/226 (49%), Gaps = 22/226 (9%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDTT 143
           + I+++D+ +++I+KP   +   G     K   N    HY  +   P   +VHRLD  T+
Sbjct: 17  IEILWQDEHLLLIDKPSGLLSLSG-----KKPQNLDSVHYRLVQTFPGCTLVHRLDFGTS 71

Query: 144 GLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG-GMIDKPIGRHSTKRTLMSVS 202
           GLMVVA+       L +   +R V + Y A++ G +    G+ID PI +      LMS+ 
Sbjct: 72  GLMVVARNKAINAALCQQFSQRSVEKAYSALLCGHVENDEGVIDAPIAKDPALFPLMSIC 131

Query: 203 PM-GKHAVTHYRVAEHFREHTRLRLRL-----ETGRTHQIRVHMAYLQHPLLGDTAYGGR 256
            + GK A + YRV E F + T L L       ETGRTHQ+R+H   L HP+LG   YGG 
Sbjct: 132 AINGKPARSRYRVVERFYQSTGLPLTRVILIPETGRTHQLRIHCQQLGHPILGCDLYGGL 191

Query: 257 ARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
                GA         D  R  LHA  L F HPV+GE +      P
Sbjct: 192 E--APGA--------EDAPRLMLHASELNFIHPVSGEPVNARHAAP 227