Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA from Escherichia coli ECRC62

 Score =  112 bits (279), Expect = 1e-29
 Identities = 83/221 (37%), Positives = 115/221 (52%), Gaps = 22/221 (9%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADK-TVLNALLFHYSPIAEVPRAGIVHRLDKDT 142
           L I+Y+DD I+V+NKP   +  PG  +  K +V+  +   Y      P+A  VHRLD  T
Sbjct: 14  LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY------PQAESVHRLDMAT 67

Query: 143 TGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIG-TMTAGGMIDKPIGRHSTKRTLMSV 201
           +G++VVA T  A+  L R  ++R+  ++Y A V G    A G++D P+      R    V
Sbjct: 68  SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 127

Query: 202 S-PMGKHAVTHYRVAEHFREHT-RLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRARI 259
               GK A T Y V E+  ++T R+ L+  TGR+HQ+RVHM  L HP+LGD  Y      
Sbjct: 128 CYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFY------ 181

Query: 260 PKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAP 300
              A+ E   M     R  LHA ML   HP  G  + F AP
Sbjct: 182 ---ASPEARAMA---PRLLLHAEMLTITHPAYGNSMTFKAP 216