Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Dickeya dianthicola ME23

 Score =  127 bits (318), Expect = 5e-34
 Identities = 99/321 (30%), Positives = 155/321 (48%), Gaps = 27/321 (8%)

Query: 10  TVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQA 69
           TV   + GQR+D  +        +S +   L +G++ VN   I KP  K++ G+ + +  
Sbjct: 12  TVSAEEAGQRIDNFLRTRLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLLDGDELRIPP 70

Query: 70  ELEDEQRWEAQDLPLN--------IVYEDDDIIVINKPRDFVVHPGAGQADKTV--LNAL 119
             + E+   A    L+        I+YEDD ++++NKP    VH G+G +   +  L AL
Sbjct: 71  VRQSEREESAVSASLDKVSALADCILYEDDYLLLLNKPSGTAVHGGSGLSFGVIEALRAL 130

Query: 120 LFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTM 179
                   E     +VHRLD+DT+G+++VAK   A   L   L+ + + ++Y A+V G  
Sbjct: 131 R------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRSKGMQKDYLALVRGQW 184

Query: 180 TAG-GMIDKPIGRH--STKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQI 236
            +    +  P+ ++   +   ++ V+  GK + T ++V E F   T +R    TGRTHQI
Sbjct: 185 QSHCKAVQAPLLKNVLQSGERIVRVNNEGKPSETLFKVEERFDCATLVRASPVTGRTHQI 244

Query: 237 RVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELE 296
           RVH  Y  HP+  D  YG R    + A   L  +        LHA  L+FEHP TGE L 
Sbjct: 245 RVHAQYAGHPIAFDDRYGDREFDAQLAGTGLKRLF-------LHAQALRFEHPHTGETLR 297

Query: 297 FHAPVPDDMVEMTLALREDAK 317
             AP+   +      LR+  K
Sbjct: 298 IEAPLDAALRYCLQTLRQRQK 318