Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 547 a.a., RNA pseudouridine synthase from Bacteroides stercoris CC31F

 Score =  111 bits (277), Expect = 5e-29
 Identities = 77/217 (35%), Positives = 114/217 (52%), Gaps = 26/217 (11%)

Query: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDTT 143
           L+I+YED+ + V+NKP   +  PG  + D   + +++    P A+ P   IVHRLD  T+
Sbjct: 344 LDIIYEDEWLAVVNKPAGMLSVPG--KEDVVSVYSMMRERYPDADGPL--IVHRLDMATS 399

Query: 144 GLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTA-GGMIDKPIGRHSTKRTLMSV- 201
           GL+VVAKT      L    + R V + Y A++ G+++   G ++ P+  +   R    V 
Sbjct: 400 GLLVVAKTKQVHQNLQAQFKNRSVGKRYIALLQGSVSQDAGTVELPLCPNPLDRPRQMVH 459

Query: 202 SPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAY---LQHPLLGDTAYGGRAR 258
           +  GK AVT + V E     TR+     TGRTHQ+RVH A+   L  P++GD  YG +A 
Sbjct: 460 TGYGKPAVTDFEVLERKDNRTRIAFYPRTGRTHQLRVHAAHPLGLHCPIVGDELYGRKA- 518

Query: 259 IPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEEL 295
                           +R  LHA ML+F HPVTG+ +
Sbjct: 519 ----------------ERLYLHAEMLEFTHPVTGKRI 539