Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., RluA family pseudouridine synthase from Bacteroides stercoris CC31F

 Score =  201 bits (510), Expect = 3e-56
 Identities = 127/302 (42%), Positives = 175/302 (57%), Gaps = 19/302 (6%)

Query: 19  RLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAELEDEQRWE 78
           R+D+ + +  T+ SR+R+++    G +  NG  + K   KV   +VITV   + D  R+E
Sbjct: 42  RVDKYLFDRLTNASRNRIQKAADAGFVMANGKPV-KSSYKVKPLDVITV---MMDRPRYE 97

Query: 79  ----AQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPI----AEVP 130
                +D+PL+IVYED  ++V+NKP   VVHPG G    T++NA+ +H   I    A  P
Sbjct: 98  NEVIPEDIPLDIVYEDKYLMVVNKPAGLVVHPGHGNYRGTLVNAIAWHMKDIPDYDANDP 157

Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG-GMIDKPI 189
             G+VHR+DKDT+GL+V+AKT  A+T L      +   R Y A+V G +    G I   +
Sbjct: 158 HVGLVHRIDKDTSGLLVIAKTPDAKTNLGLQFFNKTTKRRYRALVWGNVEQDEGTIVGNV 217

Query: 190 GRHSTKRTLMSVSP--MGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMAYLQHPL 247
           GR+   R  M+V P   GKHAVTHYRV E     T +   LETGRTHQIRVHM ++ H L
Sbjct: 218 GRNPKDRMQMTVLPDDQGKHAVTHYRVLERLGYVTLVECVLETGRTHQIRVHMKHIGHIL 277

Query: 248 LGDTAYGGRARIPKGATEELTEMIRD-FD---RQALHAVMLKFEHPVTGEELEFHAPVPD 303
             D  YGG   +      +  + + + FD   RQALHA+ L F HPVTGEE+ F + +PD
Sbjct: 278 FNDERYGGHEILKGTHFAKYKQFVNNCFDICPRQALHAMTLGFVHPVTGEEMYFTSELPD 337

Query: 304 DM 305
           DM
Sbjct: 338 DM 339