Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., 23S rRNA pseudouridine(955,2504,2580) synthase from Escherichia coli BL21

 Score =  132 bits (333), Expect = 9e-36
 Identities = 100/312 (32%), Positives = 152/312 (48%), Gaps = 25/312 (8%)

Query: 15  QLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAELEDE 74
           + GQR+D  +        +S +   L +G++ VN   I KP  K+  G+ + +      E
Sbjct: 17  EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAE 75

Query: 75  QRWEAQDLPLN--------IVYEDDDIIVINKPRDFVVHPGAGQADKTV--LNALLFHYS 124
           +  EA    L         I+YEDD I+V+NKP    VH G+G +   +  L AL     
Sbjct: 76  REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR---- 131

Query: 125 PIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAG-G 183
              E     +VHRLD+DT+G+++VAK   A   L   L+++ + ++Y A+V G   +   
Sbjct: 132 --PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189

Query: 184 MIDKPIGRH--STKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHMA 241
            +  P+ ++   +   ++ VS  GK + T ++V E +   T +R    TGRTHQIRVH  
Sbjct: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249

Query: 242 YLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPV 301
           Y  HP+  D  YG R         +LTE     +R  LHA  LKF HP TGE +   AP+
Sbjct: 250 YAGHPIAFDDRYGDRE-----FDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304

Query: 302 PDDMVEMTLALR 313
            + +      LR
Sbjct: 305 DEGLKRCLQKLR 316