Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., Ribosomal large subunit pseudouridine synthase D from Azospirillum sp. SherDot2

 Score =  219 bits (558), Expect = 8e-62
 Identities = 141/319 (44%), Positives = 182/319 (57%), Gaps = 13/319 (4%)

Query: 7   LTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVIT 66
           L  T+ D   GQRLD+A+A    D SRSR++  L +G +  +G  IT    +V  G+   
Sbjct: 31  LAYTIPDEAAGQRLDKALAAGLPDLSRSRVQALLEQGCVRGDGRTITDASLRVKPGQTFE 90

Query: 67  VQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH---- 122
           VQ    +     AQD+PL++VYED D++VI+KP   VVHP AG  D T++NALL H    
Sbjct: 91  VQVPGAEAAEPVAQDIPLDVVYEDADVLVIDKPAGLVVHPAAGNPDGTLVNALLAHCGDS 150

Query: 123 YSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT-A 181
            S I  V R GIVHRLDKDT+GLMVVAK   A   L      R ++R Y A+V G     
Sbjct: 151 LSGIGGVRRPGIVHRLDKDTSGLMVVAKNDRAHHGLSDQFADRTLSRTYLALVWGVPNPT 210

Query: 182 GGMIDKPIGRHSTKRTLMS-VSPMGKHAVTHYRVAEHFREHTRL-RLRLETGRTHQIRVH 239
            G I+  IGR S  R  M+ V+  GK A T YRV + F     L    LETGRTHQIRVH
Sbjct: 211 QGRIEGNIGRSSADRKKMAVVTGGGKPAGTKYRVVKSFGMAASLVECVLETGRTHQIRVH 270

Query: 240 MAYLQHPLLGDTAYG-GRARIPKG-----ATEELTEMIRDFDRQALHAVMLKFEHPVTGE 293
           + ++ HPL+GD  YG GR+  P G       E +   +  F RQALHA  L F HPV+GE
Sbjct: 271 LTHIGHPLVGDPLYGRGRSGRPGGKFASLLDEPVRSSLVGFPRQALHAAALTFRHPVSGE 330

Query: 294 ELEFHAPVPDDMVEMTLAL 312
            + F + +P D+ E+ + L
Sbjct: 331 IVAFRSSIPADIHELIVTL 349