Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

 Score =  223 bits (567), Expect = 7e-63
 Identities = 131/310 (42%), Positives = 181/310 (58%), Gaps = 20/310 (6%)

Query: 24  VAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAELEDEQRWEAQDLP 83
           V E+ +D SRSRLK  + +G + +NG  +T+P+ KV  G+ + +     ++   + +D+P
Sbjct: 30  VGEVGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVPQGEDIP 89

Query: 84  LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFH----YSPIAEVPRAGIVHRLD 139
           L++ YED+D+IV+ KP   VVHPGAG    T++NAL++H     S I  V R GIVHRLD
Sbjct: 90  LDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLD 149

Query: 140 KDTTGLMVVAKTVPAQTRLVRALQKRDVT----REYEAIVIG-TMTAGGMIDKPIGRHS- 193
           K+T+G+MVVAK   A   L         T    R Y+A+V G   T  G +D  +GR + 
Sbjct: 150 KETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGRGTD 209

Query: 194 -TKRTLMSVSPM-GKHAVTHYRVAEHFREH-------TRLRLRLETGRTHQIRVHMAYLQ 244
            TKR + +      + A+THY V E F E        + +  RLETGRTHQIRVHMA++ 
Sbjct: 210 RTKRAVKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAHIG 269

Query: 245 HPLLGDTAYGGRARIPKGATEE-LTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVPD 303
           HPL+GD  YG   R      +E     +  F RQALHA +L FEHP TGE +EF   +P+
Sbjct: 270 HPLIGDPEYGAAFRTKANLLDEPARSTVNRFPRQALHAYLLAFEHPRTGEVMEFETDMPE 329

Query: 304 DMVEMTLALR 313
           DM E+  ALR
Sbjct: 330 DMEELVTALR 339