Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 221 a.a., Dual-specificity RNA pseudouridine synthase RluA from Acinetobacter radioresistens SK82

 Score =  120 bits (302), Expect = 2e-32
 Identities = 79/225 (35%), Positives = 116/225 (51%), Gaps = 24/225 (10%)

Query: 83  PLNIVYEDDDIIVINKPRDFVVHPGA--GQADKTVLNALLFHYSPIAEVPRAGIVHRLDK 140
           PL+I+YEDDD+I+I+KP   +  PG      D   L  L        + P A I HRLD 
Sbjct: 15  PLSIIYEDDDLIIIDKPAGLLSVPGRLPEHQDSAYLRLL-------EKYPHAKITHRLDM 67

Query: 141 DTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGMIDKPIGRHSTKRTLMS 200
            T+G+++ AK   A+  + +  Q R VT+ Y A++ G +   G ID P+      R    
Sbjct: 68  ATSGILMFAKHRDAEVAISKMFQARTVTKRYVALIQGQLNEQGSIDVPLITDWENRPRQI 127

Query: 201 VS-PMGKHAVTHYRVAEHFREH--TRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRA 257
           V   +GK A T ++V ++  EH  TR+ L   TGR+HQ+RVHM Y+ HP++GD  Y    
Sbjct: 128 VHFELGKSAKTLFQVLQYHEEHDMTRVLLTPITGRSHQLRVHMQYIGHPIMGDKLYHPE- 186

Query: 258 RIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
             P G             R ALHA  L F+ P++ + +E +  +P
Sbjct: 187 --PGGFY---------LRRMALHASYLAFQQPLSKDLIEINMAIP 220