Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 214 a.a., Dual-specificity RNA pseudouridine synthase RluA from Acinetobacter radioresistens SK82

 Score =  129 bits (325), Expect = 5e-35
 Identities = 78/224 (34%), Positives = 121/224 (54%), Gaps = 24/224 (10%)

Query: 85  NIVYEDDDIIVINKPRDFVVHPGAGQA-DKTVLNALLFHYSPIAEVPRAGIVHRLDKDTT 143
           ++++ D+D +VI+KP   +  PG G+A   +VL  L      +A  P+  ++HRLD+DT+
Sbjct: 8   HLIHRDEDFMVIHKPSGILSVPGKGEALSDSVLTRL------VAIEPKTLLIHRLDRDTS 61

Query: 144 GLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGMIDKPIGRHSTKRTL-MSVS 202
           G++V   +   Q  + R  Q+R  T+ Y+A+V G +   G +D P+        L ++ +
Sbjct: 62  GILVFGLSRRGQNSIARQFQERQTTKTYQALVAGHLQGEGTVDVPVVYDPAHPPLHIADA 121

Query: 203 PMGKHAVTHYRVAEHF----REHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAYGGRAR 258
              K A+TH++  E F    ++ TR++L   TGR+HQ+RVHM YL H ++GDT Y     
Sbjct: 122 HHNKPALTHWQAIEQFEINGQQVTRVKLVPVTGRSHQLRVHMQYLGHAIVGDTLYAD--- 178

Query: 259 IPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVP 302
                     E  +   R  LHA  L F HP TGE L F+ PVP
Sbjct: 179 ---------LEQQQLMPRLCLHAEQLGFAHPQTGEALNFYCPVP 213