Pairwise Alignments

Query, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., Ribosomal large subunit pseudouridine synthase C from Acinetobacter radioresistens SK82

 Score =  122 bits (306), Expect = 1e-32
 Identities = 95/317 (29%), Positives = 144/317 (45%), Gaps = 30/317 (9%)

Query: 11  VKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVMGGEVITVQAE 70
           V + Q GQR+D  +        +SR+   + EG++ VN   I       +G +V      
Sbjct: 15  VDEHQAGQRIDNFLFSRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLAIGDQVRVAPIR 74

Query: 71  LEDEQRWE-------AQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHY 123
            E +           AQ L   ++YED+ ++V+NKP    VH G+G     V   L+   
Sbjct: 75  FEPKDETPVPVSDKVAQGLLSRVIYEDEGLMVVNKPSGIAVHGGSG-----VAYGLIEGL 129

Query: 124 SPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGG 183
                     +VHR+D+DT+GL++++K       L   L++  + + Y AIV G ++   
Sbjct: 130 RAATGKKYLELVHRIDRDTSGLVMISKKRSVLKTLQDLLREHKIKKTYAAIVKGQVSLDQ 189

Query: 184 -MIDKPIGRH--STKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHM 240
            +ID P+ R+  +     + VS  GK + T + VAE F   T +     +GRTHQIRVH 
Sbjct: 190 QLIDAPLYRYELANGERRVRVSKEGKDSKTQWNVAERFMHATLVYASPLSGRTHQIRVHG 249

Query: 241 AYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAP 300
             + HPL+GD  YG      KG             R  LHA+ L+     T E     AP
Sbjct: 250 LSIGHPLVGDDKYGHETEY-KGPKPR---------RLCLHAIRLEIPGYPTIE-----AP 294

Query: 301 VPDDMVEMTLALREDAK 317
           +P+DM  +   LR   K
Sbjct: 295 LPEDMQSLAAQLRAQKK 311