Pairwise Alignments

Query, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., DNA transporter from Pseudomonas simiae WCS417

 Score =  174 bits (442), Expect = 2e-48
 Identities = 92/240 (38%), Positives = 146/240 (60%), Gaps = 3/240 (1%)

Query: 1   MKYQTLSGLLALSLLFGCSSSPDVVPD-VPPSQLYSEAQTALQSGTWLTAIEKLEALDSR 59
           +K+  L  +LA++    CSS+ +VV + +   +LY  AQ  L + ++ +A  KL+AL+SR
Sbjct: 3   VKHLLLIAILAMTA--ACSSTKEVVDENLSEVELYQLAQKDLDNNSFTSATAKLKALESR 60

Query: 60  YPFGAYSEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDR 119
           YPFG Y++Q QL+LIYA YKN +     +  ERF RL+P H  +D+  YM+GLT   QD 
Sbjct: 61  YPFGRYADQAQLELIYANYKNAEPEAAKSAAERFIRLHPQHPNVDYAYYMKGLTSFDQDV 120

Query: 120 NFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYDLAT 179
             +     +D   RDP   + ++ +F +L  RYPNS YA DA++RM  L+N LA Y++  
Sbjct: 121 GLLARFLPLDMTKRDPGAARDSYNEFAQLTSRYPNSRYAPDAKQRMIYLRNLLASYEIHV 180

Query: 180 ADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLN 239
           A +YL R+A++AA NR + + + + +T +    L +  EAYQ+L L +    + + ++LN
Sbjct: 181 AHYYLTRQAYVAAANRGRYVVENFQETPSVGDGLAVMTEAYQRLHLDELASTSLETLKLN 240