Pairwise Alignments

Query, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., Outer membrane protein assembly factor BamD from Pseudomonas lactucae CFBP13502

 Score =  175 bits (443), Expect = 1e-48
 Identities = 92/240 (38%), Positives = 146/240 (60%), Gaps = 3/240 (1%)

Query: 1   MKYQTLSGLLALSLLFGCSSSPDVVPD-VPPSQLYSEAQTALQSGTWLTAIEKLEALDSR 59
           +K+  L  +LA++    CSS+ +VV + +   +LY  AQ  L + ++ +A  KL+AL+SR
Sbjct: 3   VKHLLLIAILAMTA--ACSSTKEVVDENLSEVELYQLAQKDLDNNSYTSATAKLKALESR 60

Query: 60  YPFGAYSEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDR 119
           YPFG Y++Q QL+LIYA YKN +     +  ERF RL+P H  +D+  YM+GLT   QD 
Sbjct: 61  YPFGRYADQAQLELIYANYKNAEPEAAKSAAERFIRLHPQHPNVDYAYYMKGLTSFDQDV 120

Query: 120 NFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYDLAT 179
             +     +D   RDP   + ++ +F +L  RYPNS YA DA++RM  L+N LA Y++  
Sbjct: 121 GLLARFLPLDMTKRDPGAARDSYNEFAQLTSRYPNSRYAPDAKQRMIYLRNLLASYEIHV 180

Query: 180 ADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLN 239
           A +YL R+A++AA NR + + + + +T +    L +  EAYQ+L L +    + + ++LN
Sbjct: 181 AHYYLTRQAYVAAANRGRYVVENFQETPSVGDGLAVMTEAYQRLHLDELASTSLETLKLN 240