Pairwise Alignments

Query, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., outer membrane protein assembly factor BamD from Magnetospirillum magneticum AMB-1

 Score = 89.7 bits (221), Expect = 6e-23
 Identities = 57/234 (24%), Positives = 113/234 (48%), Gaps = 11/234 (4%)

Query: 6   LSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAY 65
           LS  LA  L   CS       + P  +LY+EA   + +  +  A +  + +D ++P+  +
Sbjct: 16  LSAALAAGL-GACSEKKPEYVERPVEELYNEAMDLVDANEYYKAAQLFDEVDRQHPYSVW 74

Query: 66  SEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDL 125
           + + QL   YA Y+ +     +  ++RF +L+P ++ + +  Y++GL +  Q        
Sbjct: 75  ATKAQLMSAYALYERNKYDDAIVALDRFIQLHPGNKSIAYGYYLKGLCYYEQ-------- 126

Query: 126 FNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYDLATADFYLR 185
             I    RD +  + A    ++++ R+P++PYA DA+ ++   ++ LA  ++    +Y  
Sbjct: 127 --ITDVARDQKLTEQALKIMQEVVDRFPSTPYARDARLKIDLARDHLAGKEMNIGRYYQH 184

Query: 186 REAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLN 239
            E  +AA+NR + + + Y  T    ++L   +E Y  LGL     R   ++  N
Sbjct: 185 LEHHLAALNRFKVVAEQYQTTTHVPEALYRMVEIYTALGLDQEAARAAAVLGHN 238