Pairwise Alignments

Query, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

Subject, 254 a.a., Outer membrane protein assembly factor BamD precursor from Alteromonas macleodii MIT1002

 Score =  219 bits (557), Expect = 5e-62
 Identities = 109/233 (46%), Positives = 159/233 (68%), Gaps = 4/233 (1%)

Query: 11  ALSLLFGCSSSPD----VVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYS 66
           A+  + GCSSS +    V+ ++   QLY  A+ +++ G +  A + L ALDSRYPFG  S
Sbjct: 14  AMVSVAGCSSSDNEEKAVLANMGAQQLYDRAKQSMEVGNFSAAAQTLSALDSRYPFGPLS 73

Query: 67  EQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLF 126
            QVQLDLIY+YYK+      LATI+RF RLNP H  +D+  YMRGLT+M  D N   +L 
Sbjct: 74  HQVQLDLIYSYYKSGKNEETLATIDRFIRLNPNHSDVDYAYYMRGLTNMESDSNLFQELM 133

Query: 127 NIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYDLATADFYLRR 186
           NIDR DRDP   +AAF DF++L+Q+YP+S YA DA++RM  +K+RLA Y++A A FY+RR
Sbjct: 134 NIDRTDRDPSKSRAAFEDFRRLIQQYPDSKYAADAKQRMVHIKDRLARYEIAIARFYMRR 193

Query: 187 EAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLN 239
           +A++AA NR + + + +P+T   +++LEI + +Y+QLGL +      + ++LN
Sbjct: 194 QAYVAAANRGRYVIEHFPNTTQVQQALEIMVSSYEQLGLDELRNNAMKTLKLN 246