Pairwise Alignments

Query, 241 a.a., outer membrane protein assembly factor BamD from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., Outer membrane protein assembly factor BamD from Acinetobacter radioresistens SK82

 Score =  152 bits (385), Expect = 6e-42
 Identities = 84/241 (34%), Positives = 141/241 (58%), Gaps = 10/241 (4%)

Query: 9   LLALSL-----LFGCSSSP-----DVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDS 58
           +LALSL     L GCSS+P     D  P       +++A+ AL+ G +  A ++LEALD+
Sbjct: 10  MLALSLGIASALVGCSSNPKKEVVDTGPQSSEQVYFNKAERALERGQYSDAAKQLEALDT 69

Query: 59  RYPFGAYSEQVQLDLIYAYYKNDDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQD 118
            +P G Y++Q QL+L+Y  ++  D    +A  ERF RLNP H  +D+  Y+RG+ +M Q+
Sbjct: 70  YFPTGQYAQQAQLELLYVKFQQKDYEGAIALAERFIRLNPQHPNVDYAYYVRGVANMEQN 129

Query: 119 RNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAEDAQRRMFALKNRLAEYDLA 178
            + +    ++ +  RD   +K A+ +F   ++RYP+S YA DA +RM  +   LAE ++ 
Sbjct: 130 YDGLLRYTSLQQSHRDVSYLKVAYQNFVDFIRRYPSSQYAVDAAQRMKFIGQELAENEMN 189

Query: 179 TADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQL 238
            A + L+R+AW+AA+ R Q + + YP T    ++L     AY +LG   + ++  ++++L
Sbjct: 190 VARYNLKRKAWVAALERAQWVVEHYPQTPQIPEALATMAYAYDKLGDQASSQQYVEVLKL 249

Query: 239 N 239
           N
Sbjct: 250 N 250



 Score = 23.9 bits (50), Expect = 0.004
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 180 ADFYLRREAWIAAINRTQELQKTYPDTEAARKS-LEIQLEAYQQLGLTDAIERTKQLMQL 238
           A+  L R  +  A  + + L   +P  + A+++ LE+    +QQ     AI   ++ ++L
Sbjct: 48  AERALERGQYSDAAKQLEALDTYFPTGQYAQQAQLELLYVKFQQKDYEGAIALAERFIRL 107

Query: 239 NP 240
           NP
Sbjct: 108 NP 109