Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., Putrescine-binding periplasmic protein SpuD from Xanthobacter sp. DMC5

 Score = 89.4 bits (220), Expect = 1e-22
 Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 38/340 (11%)

Query: 14  MIKRFLSLMVLNTVCYQASALE----LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDND 69
           M+++ L+ +V+ T+     A      +NV+ W D I P+V+E + K+TG+ V    FD++
Sbjct: 1   MLRQTLAAVVVATLGLTGVATAQDKVVNVFNWSDYIDPTVLEDFTKETGIKVRYDVFDSN 60

Query: 70  D--ERSLLMLKS---VQLPFDIMVLDNVSAFIFSRQNVFEDLTALPNRANNDPMWLQACG 124
           +  E  LL  K+   V +P    +   + A +F    +  D + LPN     P   Q   
Sbjct: 61  EVLETKLLAGKTGYDVVVPSGSFLQRQIKAGVF----IPLDKSKLPNLQYAWPEVTQRLA 116

Query: 125 T------HAVPYFWGSVGIAY-----RKSLFDKPPTQWSEVV--DIAPAHRGRVGMLKDS 171
                  HAV Y WG+ GI Y     ++ L D P   W  +   +I    +     + D 
Sbjct: 117 VYDPGNAHAVNYMWGTTGIGYNVDKVKERLGDIPLNTWDIIFKPEILSKLKDCGVYVLDG 176

Query: 172 VETLLP-ALYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMA 230
            E ++P A+  L   P + + + + +A  LL    P+I  ++    Y+ +  + D + +A
Sbjct: 177 PEEVIPTAMKYLGLDPNSKNPEDIAKAGELLMTIRPYIKKFDSS-GYINALARGD-ICIA 234

Query: 231 VSYSGDHYSLNRFFNTQ---------DWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFL 281
           + +SGD Y                  + D+ +P+    +W D  A+   + N   A AF+
Sbjct: 235 LGWSGDVYQAKTRAQEAAKKTKKKPVNVDYVLPKEGALMWFDNFAIPKDAKNIDNALAFI 294

Query: 282 DFLMKPDIAAINAEYIRAASPNYKARALLPVEHREDLSIY 321
           +++MKP++AA N+ +I  A+ N  ++  +  E  ++ SIY
Sbjct: 295 NYMMKPEVAAKNSNFISYANGNLASQKFIDKEIMDNPSIY 334