Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 74/336 (22%), Positives = 140/336 (41%), Gaps = 23/336 (6%)

Query: 14  MIKRFLSLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERS 73
           M+K  +    + +    A    L VY W D I P  +E +  +      ++   + +E  
Sbjct: 3   MLKSLVLCAAVISGMAHAEEKTLRVYNWFDYITPKALEDFKAQNPTIKLVYDIFDTNEAL 62

Query: 74  LLMLKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQACGTH----- 126
              L +    +D++V  NV         VF+  D + L N  + DP  ++    +     
Sbjct: 63  EAKLLTGNAGYDVVVPSNVFLAKQIEAGVFQPLDRSQLQNWKHLDPKLMKLIEANDPGNK 122

Query: 127 -AVPYFWGSVGIAYRKSL------FDKPPTQWSEVV---DIAPAHRGRVGMLKDSVETLL 176
            AVPY +G++ I +           + P   W  +    +I+   +  V +L    E L 
Sbjct: 123 FAVPYMYGTILIGFNPDKVKAALGVNAPVDSWDLIFKEENISKLKQCGVALLDSPSEILP 182

Query: 177 PALYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGD 236
            AL  L   P + +     +A  LL    P++ TY +   Y+      D + +AV YSG 
Sbjct: 183 LALQHLGLDPNSSNPKDYAKAEALLLKIRPYV-TYFHSSKYMADIANGD-ICVAVGYSGS 240

Query: 237 -HYSLNRFFNTQDW---DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAI 292
              + NR  + ++    D  +P+    +W D +A+   + N   A  F+++L++P + A 
Sbjct: 241 FSQAANRARDAKNGVTVDMRLPKEGAPIWFDMLAIPKGAKNPQDAYTFINYLLQPQVIAP 300

Query: 293 NAEYIRAASPNYKARALLPVEHREDLSIYLPEQRLA 328
            ++++   +PN  A   +    R + ++Y  E  +A
Sbjct: 301 ISDFVGYPNPNKDATEQVDPSIRNNPNLYPTEAAMA 336