Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 80/330 (24%), Positives = 152/330 (46%), Gaps = 27/330 (8%)

Query: 32  SALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERSLLMLKSVQLPFDIMVLDN 91
           +A  +++Y W D I    +  + K +G+      FD+++     +L   +  +D++V  N
Sbjct: 24  AAPTVHIYNWSDYIGTDTLANFEKASGIKPVYDVFDSNETLEGKLLAG-RTGYDVVVPSN 82

Query: 92  VSAFIFSRQNVFE--DLTALPNRANNDPMWLQAC------GTHAVPYFWGSVGIAY---- 139
                  +   F+  D + L N AN DP  L+          +AVPY WG+ GI Y    
Sbjct: 83  HFLGKQIKAGAFQKLDKSLLTNYANLDPALLKRLEKNDPGNQYAVPYLWGTNGIGYNGDK 142

Query: 140 -RKSLFDKPPTQWSEVVDIAPAHRGRVGM----LKDSVETLLPA-LYMLNASPITDSIDT 193
            ++ L       W+ + +  P +  ++        DS + +LPA L  +  +P + + D 
Sbjct: 143 GKEVLGVDHIDSWAVLFE--PENMKKLATCGVSFMDSADEMLPAVLNYMGLNPNSTNPDD 200

Query: 194 LRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYSLN----RFFNTQDW 249
            ++A   L    P++ TY +   Y+ S     N+ +A  +SGD +             + 
Sbjct: 201 YKKAEEKLLKVRPYV-TYFHSSKYI-SDLANGNICVAAGFSGDVFQAKARAAEAGKGVNI 258

Query: 250 DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARAL 309
            +++P+    LW D +A+   + N  +A AF+++L++P++ A  ++Y+  A+PN  A  L
Sbjct: 259 AYTIPKEGGNLWFDVLAIPKDATNVKEAHAFINYLLQPEVIAQVSDYVGYANPNPGADKL 318

Query: 310 LPVEHREDLSIYLPEQRLAEGIIDSELSAK 339
           +    R D ++Y P+  L    ++ EL  K
Sbjct: 319 MEQSIRTDEAVYPPQAVLDRTFVNFELPPK 348