Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 86.3 bits (212), Expect = 1e-21
 Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 32/327 (9%)

Query: 19  LSLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD--ERSLLM 76
           L LM++ ++   A  ++  +Y W D IAP   + + K+TG+      +D+++  +  L+ 
Sbjct: 7   LPLMLVASIGQAAETVK--IYNWSDYIAPDTTKNFQKETGIGFTYDVYDSNETLDGKLMT 64

Query: 77  LKS---VQLPFDIMVLDNVSAFIFSRQNVFEDLTALPNRANNDPMWLQAC------GTHA 127
            KS   V  P +  +   +      +     D + LPN  N +P+ L+A         H 
Sbjct: 65  GKSGYDVVFPSNHFMARQIQGGALKKL----DKSQLPNWKNLNPVLLKALENNDPGNAHG 120

Query: 128 VPYFWGSVGIAY-----RKSLFDKPPTQWSEVV----DIAPAHRGRVGMLKDSVETLLPA 178
            PY WGS GI Y     +  L D  P    +++    ++A   +  V +L +  E L  A
Sbjct: 121 FPYLWGSTGIGYNIDKVKAVLGDNAPVDSWDLIFKPENMAKLQKCGVAILDNGPELLPAA 180

Query: 179 LYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGD-- 236
           L  L     +   +  ++A  LL    P++  Y +   Y       D + +AV +SGD  
Sbjct: 181 LNYLGLPHHSKKPEDYKKAEDLLMKVRPYV-AYFHSSKYTADLANGD-ICVAVGFSGDIL 238

Query: 237 --HYSLNRFFNTQDWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINA 294
                     N  +  +++P+    +W D +A+ + +PN     AF+++L++P + A   
Sbjct: 239 QAESRAKEAKNGVNIGYNIPKEGAAIWFDMVAMPADAPNEAAGYAFMNYLLRPQVMASIT 298

Query: 295 EYIRAASPNYKARALLPVEHREDLSIY 321
            Y+  A+ N  A +L+    + D  IY
Sbjct: 299 NYVHYANGNQAADSLVDPAIKADTKIY 325