Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 89/344 (25%), Positives = 157/344 (45%), Gaps = 31/344 (9%)

Query: 32  SALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD--ERSLLMLKS---VQLPFDI 86
           +A  ++VY W D I  + +  +  KTG+      FD+++  E  LL  ++   V +P + 
Sbjct: 22  AAPTVSVYNWTDYIGETTLADFQAKTGIKPIYDVFDSNETLEGKLLAGRTGYDVVVPSNH 81

Query: 87  MVLDNVSAFIFSRQNVFEDLTALPNRANNDPMWLQAC------GTHAVPYFWGSVGIAY- 139
            +   V A  F +     D   LPN  N DP  L+          H+VPY WG+ GI Y 
Sbjct: 82  FLARQVKAGAFLKL----DRAQLPNFKNLDPKLLKLLEKNDPGNAHSVPYLWGTNGIGYN 137

Query: 140 ----RKSLFDKPPTQWS---EVVDIAPAHRGRVGMLKDSVETLLPA-LYMLNASPITDSI 191
               ++ L       W+   E  +I   ++  V  L DS + L PA L  +   P +++ 
Sbjct: 138 VDKVKEVLGIDAIDSWAVLFEPENIKKLNQCGVAFL-DSADELFPAILNYMGKDPRSENP 196

Query: 192 DTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHY-SLNRFFNTQDW- 249
           +  +QA   L    P+I TY +   Y+ S     N+ +A  YSGD + + NR    ++  
Sbjct: 197 EDYKQAEAKLLTLRPYI-TYFHSSKYI-SDLANGNICVAFGYSGDVFQAANRAKEAKNGV 254

Query: 250 --DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKAR 307
              +S+P+    LW D +A+ + + +  +A AF+++L+ P + A  +  +  A+ N  A+
Sbjct: 255 KIAYSIPKEGSNLWFDLLAIPADASHPKEAHAFINYLLDPQVIAKVSASVGYANANPAAK 314

Query: 308 ALLPVEHREDLSIYLPEQRLAEGIIDSELSAKNLSLRAKIISSV 351
           A +  E   +  +Y  +  L +  I +  +   + L  +  S V
Sbjct: 315 AFMDPELVNNPEVYPSQDVLDKLYISTTPTPATMRLMTRAWSKV 358