Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 79/343 (23%), Positives = 154/343 (44%), Gaps = 19/343 (5%)

Query: 15  IKRFLSLMVLNTVCYQASALE---LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDE 71
           +K F+  +VL+ V   +       LNVY W   +    ++A+ ++ GV++N   F+N++ 
Sbjct: 1   MKTFIKGLVLSAVVASSQVYAEQTLNVYAWGGYLPEKSLKAFEQQEGVTINYSTFENNES 60

Query: 72  R--SLLMLKSVQLPFDIMVLDNVSAFIFSRQNVFEDL--TALPNRANNDPMWLQAC---- 123
               L +LK     +D++           R+ +  ++    +PN  +  P  L       
Sbjct: 61  MYTKLKLLKGTG--YDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGLAHDPQ 118

Query: 124 GTHAVPYFWGSVGIAYRKSLFDKPPTQWSEVVDIAPAHRGRVGMLKDSVETLLPALYMLN 183
              ++PY WG  G+ Y  S      T+W+++ D    +  +V ++ D  +    AL +  
Sbjct: 119 NKFSLPYIWGITGLYYNSSTLPNGITKWADLWD--KQYEQQVMLIDDIRDVFGMALKLNG 176

Query: 184 ASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYSLNRF 243
            S  T + + +++AY  L A   ++L Y     +V        L M   ++G+ Y     
Sbjct: 177 FSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGM--QWNGNAYQGQ-- 232

Query: 244 FNTQDWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPN 303
               +  F +PE    LW+D   + S S N   A  F++F+ +P+  A   + +  AS  
Sbjct: 233 VEMPELKFVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIVQSLGYASAT 292

Query: 304 YKARALLPVEHREDLSIYLPEQRLAEGIIDSELSAKNLSLRAK 346
              RALLP E R++ +I+  ++ + +G   +++  + L++  K
Sbjct: 293 KGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEK 335