Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., extracellular solute-binding protein, family 1 from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 87.4 bits (215), Expect = 5e-22
 Identities = 89/353 (25%), Positives = 157/353 (44%), Gaps = 27/353 (7%)

Query: 9   VSYSQMIKRFLSLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDN 68
           +S S + K  L+   L       +   +++Y W D I  + +  +   TG+      FD+
Sbjct: 1   MSISILSKALLAAAGLTLTLGAQAESTVHIYNWSDYIGKTTLADFEATTGIKPMYDVFDS 60

Query: 69  DDERSLLMLKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQAC--- 123
           ++     +L   +  +D++V  N       +   F+  D + LPN  N DP  L+     
Sbjct: 61  NETLEAKLLAG-RTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLPNYKNLDPALLKRLEKN 119

Query: 124 ---GTHAVPYFWGSVGIAYR----KSLF--DKPPTQWS---EVVDIAPAHRGRVGMLKDS 171
                +AVPY WG+ GI Y     K++   DK  + W+   E  +I       V  L DS
Sbjct: 120 DPGNQYAVPYLWGTNGIGYNVEKVKAVLGVDKIDS-WAVLFEPENIKKLSSCGVAFL-DS 177

Query: 172 VETLLPA-LYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMA 230
            + +LPA L  L   P +      ++A   L A  P++ TY +   Y+      D + +A
Sbjct: 178 ADEMLPAVLNYLGLDPNSTKEADYKEAEAKLMAIRPYV-TYFHSSKYITDLANGD-ICVA 235

Query: 231 VSYSGDHYSLNRFFNTQDWD----FSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMK 286
             +SGD +                +S+P+    LW D +A+ + S N  QA AF+++++ 
Sbjct: 236 AGFSGDVFQAKARAEEAGKGVKLAYSIPKEGGNLWFDMLAIPADSKNIKQASAFINYMLD 295

Query: 287 PDIAAINAEYIRAASPNYKARALLPVEHREDLSIYLPEQRLAEGIIDSELSAK 339
           P + A  ++ +  A+PN  +   +  + R D ++Y P++ L    ++SEL  K
Sbjct: 296 PRVIAKVSDEVGYANPNPASGEFMDQKIRTDAAVYPPQEVLDRLFVNSELPLK 348