Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score = 85.9 bits (211), Expect = 2e-21
 Identities = 82/321 (25%), Positives = 144/321 (44%), Gaps = 24/321 (7%)

Query: 30  QASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERSLLMLKSVQLPFDIMVL 89
           QA    L VY W D I P  + A+ K +GV +    FD ++     +L      +D++V 
Sbjct: 24  QAEQRTLRVYNWFDYITPQTLTAFQKDSGVKLVYDIFDTNEALEAKLLTG-NSGYDVVVP 82

Query: 90  DNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQACGTH------AVPYFWGSVGIAY-- 139
            NV         VF+  D + LPN  + DP  ++    +      AVPY +G+V I +  
Sbjct: 83  SNVFLAKQIEAGVFQPLDRSKLPNWQHLDPALMKLIEANDPGNKFAVPYMYGTVLIGFNP 142

Query: 140 ---RKSLFDKPPTQWSEVV----DIAPAHRGRVGMLKDSVETLLPALYMLNASPITDSID 192
              + +L D  P    +++    +IA   +  V +L    E L  AL  L   P +D   
Sbjct: 143 AKVKAALGDNAPVDSWDLIFKEENIAKLKQCGVALLDSPSEILPLALQYLGLPPNSDKPA 202

Query: 193 TLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDH-YSLNRFFNTQDW-- 249
             ++A  L+    PHI TY +   Y+      D + +AV YSG    + NR     +   
Sbjct: 203 DYKKAEELMLKIRPHI-TYFHSSKYMADIANGD-ICVAVGYSGSFSQAANRAREANNGVV 260

Query: 250 -DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARA 308
            D  +P+    +W D +A+   + N   A  F+++L++P++ A  ++++   +PN  A  
Sbjct: 261 VDMRLPKEGAPIWFDMLAIPKGAANPEDAHTFINYLLRPEVIAPISDFVGYPNPNKDATD 320

Query: 309 LLPVEHREDLSIYLPEQRLAE 329
            +    R + ++Y   + +A+
Sbjct: 321 KVNPTIRNNPNLYPTAEAMAK 341