Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

 Score =  100 bits (248), Expect = 8e-26
 Identities = 100/329 (30%), Positives = 144/329 (43%), Gaps = 28/329 (8%)

Query: 20  SLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD--ERSLLML 77
           +LM       QA    LNVY W D IAP  +  + K+TG+ V    FD+++  E  LL  
Sbjct: 12  ALMGAMASAVQAEDKVLNVYNWSDYIAPDTIAKFEKQTGIKVKYDVFDSNETLEAKLLAG 71

Query: 78  KSVQLPFDIMVLDNVSAFIFSRQNVFEDL--TALPNRANNDPMWLQACG-------THAV 128
           KS    +DI+V  N       +  V+E+L  + LPN  N DP  L+A G        HA 
Sbjct: 72  KS---GYDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGDASDKDNKHAF 128

Query: 129 PYFWGSVGIAY-----RKSLFDKPPTQWSEVV---DIAPAHRGRVGMLKDSVETLLPALY 180
           PY WGS+GI Y     + +L       W  V    +IA      V  L    E L  AL+
Sbjct: 129 PYMWGSIGIGYNPEKVKAALGVDKIDSWDVVFKPENIAKLKSCGVSFLDAPTEMLPAALH 188

Query: 181 MLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGD-HYS 239
            L     +   + L+ A  L     P I TY +   Y+       N+ +AV YSGD   S
Sbjct: 189 YLGKPTDSTKKEDLKAAEDLFLKIRPSI-TYFHSSKYI-GDMANGNICVAVGYSGDLEQS 246

Query: 240 LNRFFNTQD---WDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEY 296
             R     D    D+ +P+     + D +A+   + +   A  F++FLM+P+I A     
Sbjct: 247 KARAHEAGDKVKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFLMQPEIMAEITNA 306

Query: 297 IRAASPNYKARALLPVEHREDLSIYLPEQ 325
           +R  + N  A   +  +   D SIY P +
Sbjct: 307 VRFPNGNAAATPFVDKDITSDPSIYPPAE 335