Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

 Score =  104 bits (260), Expect = 3e-27
 Identities = 94/353 (26%), Positives = 164/353 (46%), Gaps = 27/353 (7%)

Query: 9   VSYSQMIKRFLSLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDN 68
           +S S   K  ++   L   C   +A  ++ Y W D I P+ +  + K TG+      FD+
Sbjct: 1   MSISVFRKALMAGAGLTLACSVQAAPTVHFYNWSDYIGPTTLADFEKATGIKPVQDVFDS 60

Query: 69  DDERSLLMLKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQAC--- 123
           ++     +L      +D++V  N       +   F+  D   LPN +N DP  ++     
Sbjct: 61  NETLEGKLLAG-NTGYDVVVPSNHFLGKQIKAGAFQKLDKNLLPNYSNLDPALMKRLEKN 119

Query: 124 ---GTHAVPYFWGSVGIAY-----RKSLFDKPPTQWS---EVVDIAPAHRGRVGMLKDSV 172
                +AVPY WG+ GI Y     + +L       W+   E  ++    +  V  L DS 
Sbjct: 120 DPGNQYAVPYLWGTNGIGYNVDKVKAALGVDTIDSWAVLFEPENMKKLSKCGVAFL-DSA 178

Query: 173 ETLLPAL--YMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMA 230
           + +LPA+  YM      TD  D  +   +LL A  P++ TY +   Y+      D + +A
Sbjct: 179 DEMLPAVLNYMGLNPNSTDPKDYAKAEQKLL-AVRPYV-TYFHSSKYITDLANGD-ICVA 235

Query: 231 VSYSGDHYSLNRFFNTQ----DWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMK 286
             +SGD +             +  +++P+    LW D +A+   + N  +A AF+++L+K
Sbjct: 236 AGFSGDVFQAKARAEEAKKGVNLAYAIPKEGGNLWFDVLAIPKDAKNVKEAHAFINYLLK 295

Query: 287 PDIAAINAEYIRAASPNYKARALLPVEHREDLSIYLPEQRLAEGIIDSELSAK 339
           P++ A  ++Y+  A+PN KA AL+    R D ++Y P++ L +  ++SEL  K
Sbjct: 296 PEVIAQVSDYVGYANPNPKAGALMDQAVRTDAAVYPPQEVLDKMFVNSELPPK 348