Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score = 77.0 bits (188), Expect = 7e-19
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 23/306 (7%)

Query: 36  LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERSLLMLKSVQLPFDIMVLDNVSAF 95
           L +Y W D I  + +  + K TG+ V    FD  +     +L   +  +D+++L+     
Sbjct: 31  LRLYNWTDYIGETTLADFEKATGIKVIYDTFDGYETVQTKLLTG-RSGYDLVMLNASLVP 89

Query: 96  IFSRQNVFE--DLTALPNRAN------NDPMWLQACGTHAVPYFWGSVGIAYRKSLF--- 144
                 VF+  D   LP+  N      ND         ++ PY WGS G+ Y        
Sbjct: 90  PLISAGVFQALDKQQLPSWHNLDQQVVNDLQGYDPGLKYSAPYTWGSSGVTYNVDKITAR 149

Query: 145 --DKPPTQWSEVVDIAPAHRGR---VGMLKDSVETLLPALYMLNASPITDSIDTLRQAYR 199
             D P    + + D     R     V ++    E +  AL  L   P + S   L+ A +
Sbjct: 150 MPDAPIGSLAMLFDPKIVSRFADCGVTLMDAPTEVIPLALQYLGKDPRSASPADLKAAEQ 209

Query: 200 LLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYSLNRFFNTQDWD----FSVPE 255
           LL    P+I  ++ V +Y+ S P  D + +A+++SGD+ +          D    F +P 
Sbjct: 210 LLLGIRPYIRKFDSV-NYLTSLPNGD-VCLALTWSGDYATAQARAVEAKKDIKLSFFIPR 267

Query: 256 GRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARALLPVEHR 315
               +W D + +   +P+   A  F++FL++P   A   +YI  A+ N  A AL+  + R
Sbjct: 268 EGSLIWFDNLYIPKDAPHAANAHRFIEFLLQPQTMAKVTDYIHYANSNAAATALVRDDIR 327

Query: 316 EDLSIY 321
           +D +IY
Sbjct: 328 QDPAIY 333