Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., Putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score = 78.2 bits (191), Expect = 3e-19
 Identities = 83/335 (24%), Positives = 140/335 (41%), Gaps = 33/335 (9%)

Query: 12  SQMIKRFLSLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDE 71
           S M +    L ++  +  QA    +N+Y W D +AP  ++ + ++TG  V    FD  + 
Sbjct: 2   SAMRRSLCLLSLVLALPLQAEEKVVNLYSWADYVAPQTLQRFEQETGYKVRYDTFDTPEV 61

Query: 72  RSLLMLKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQACGT---- 125
               +L      +D++V  +       + +  +  D  A+P   N D   L         
Sbjct: 62  LETKLLTGGS-GYDVVVPSSTVLARALKAHALQPLDAQAMPGYGNLDKDLLGKLAEVDPG 120

Query: 126 --HAVPYFWGSVGI-----AYRKSLFDKPPTQWSEVV--DIAPAHRGRVGMLKDSVETLL 176
             HAVPY WG++G+     A R+ L D P      +   + A   +G    L DS + ++
Sbjct: 121 NRHAVPYTWGTLGLGVNVEAVRQRLGDVPLDSLDLLFKPEYATRLKGCGIALPDSPQEVI 180

Query: 177 P-ALYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLH-----MA 230
             AL  L   P + + D L  A  LL    P I       SYV +  Q ++L      +A
Sbjct: 181 GVALNYLGKDPYSQNKDDLAAAQNLLSQLQPSI-------SYVANGRQINDLANGSVCLA 233

Query: 231 VSYSGDHY----SLNRFFNTQDWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMK 286
           ++Y+GD         R     +  + +P     +W D + +   +P+   A+AF+ F++K
Sbjct: 234 LTYNGDAAMAADQARRAGKPFEVIYRIPREGTLVWQDNLVIPKDAPHPEAARAFIAFMLK 293

Query: 287 PDIAAINAEYIRAASPNYKARALLPVEHREDLSIY 321
           P+  A     +  A+ N  A  L+    R D  IY
Sbjct: 294 PESVAALTNTLFFANANQAATPLVDEAVRNDPDIY 328