Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., polyamine ABC transporter substrate-binding protein from Pseudomonas sp. SVBP6

 Score = 89.7 bits (221), Expect = 1e-22
 Identities = 83/344 (24%), Positives = 156/344 (45%), Gaps = 26/344 (7%)

Query: 30  QASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERSLLMLKSVQLPFDIMVL 89
           ++SA  +++Y W D IAP+  + + + +G++     FDN D     ++   +  +D++  
Sbjct: 24  ESSAPSVHIYNWYDYIAPNTTKEFQQASGIAPVYDVFDNSDVMQSKLMAG-RSGYDVVFA 82

Query: 90  DNVSAFIFSRQNVFEDL--TALPNRANNDPMWLQACGTH------AVPYFWGSVGIAY-- 139
                    +  V  +L  + LPN  + DP  L     +      A PY WG+ G+ Y  
Sbjct: 83  SGDLLPNLIKAGVLAELDRSQLPNLPHLDPQILAKLQNNDPGNRFAAPYLWGTTGLGYDV 142

Query: 140 ---RKSLFDKPPTQWSEVV----DIAPAHRGRVGMLKDSVETLLPALYMLNASPITDSID 192
              +  L D  P    +++    +IA      V ML    E +  AL+ L     + + +
Sbjct: 143 DKVKARLGDAAPLNSWDLIFKEENIAKLADCGVAMLDAPNEIIPIALHYLGLPYNSKNPE 202

Query: 193 TLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHY----SLNRFFNTQD 248
             R+A  LL    PHI  ++   S   S     N+ + + +SG  +    + +   N +D
Sbjct: 203 DYRKAEALLLKVRPHIAYFDS--SRFISDLANGNVCVVLGWSGGVFDARLAADNARNGRD 260

Query: 249 WDFSVP-EGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKAR 307
             +S+P EG P+ W++ M +   +PN  Q  AF++++++P++ A +  Y+   + N  A 
Sbjct: 261 IRYSIPREGAPF-WLESMVLLKDAPNPQQGLAFINYMLRPEVIAASTNYLGYPNANKDAA 319

Query: 308 ALLPVEHREDLSIYLPEQRLAEGIIDSELSAKNLSLRAKIISSV 351
            L+  + R++ S+Y P+  L        L  K   +R ++ S V
Sbjct: 320 PLVEAKIRDNPSVYPPQTVLDTLFALEPLPLKYERIRTRVWSKV 363