Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Putrescine ABC transporter putrescine-binding protein PotF from Pseudomonas sp. S08-1

 Score =  100 bits (248), Expect = 8e-26
 Identities = 99/353 (28%), Positives = 156/353 (44%), Gaps = 30/353 (8%)

Query: 14  MIKRFLSLMVLNTVC------YQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFD 67
           MIK F   ++  T+        QA    L+VY W D IAP  +E + K+TG+ V    FD
Sbjct: 1   MIKTFGKTLLAMTLAGAVAGVAQADDKVLHVYNWSDYIAPETLEKFTKETGIKVVYDVFD 60

Query: 68  NDDERSLLMLKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQAC-- 123
           +++     +L      +DI+V  N       +  VF+  D + LPN  N D   L+A   
Sbjct: 61  SNEVLEAKLLAGSS-GYDIVVPSNPFLAKQIKAGVFQKLDKSKLPNWKNLDTNLLKALDP 119

Query: 124 ----GTHAVPYFWGSVGIAYR----KSLFDK--PPTQWSEVV---DIAPAHRGRVGMLKD 170
                 +++PY WG++GI Y     K++  +  P   W  V    ++A      V  L  
Sbjct: 120 SDPGNQYSIPYMWGTIGIGYNVDKVKAVLGENAPVDSWDLVFKPENMAKLKECGVSFLDS 179

Query: 171 SVETLLPALYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMA 230
             E L  AL  L  SP ++  D L++A  L  +       Y +   Y+       N+ +A
Sbjct: 180 PTEILPAALNYLGFSPTSEKPDELKKAEELFLSIRKDT-AYFHSSKYI-GDLANGNICVA 237

Query: 231 VSYSGDHYS----LNRFFNTQDWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMK 286
           + YSGD Y          N  +  +S+P+     + D +AV + + N   A AFL+FLMK
Sbjct: 238 IGYSGDLYQSKSRAEEAKNGVNILYSIPKEGAGSFFDMLAVPADAKNVEGAHAFLNFLMK 297

Query: 287 PDIAAINAEYIRAASPNYKARALLPVEHREDLSIYLPEQRLAEGIIDSELSAK 339
           P++ A    +++  + N  A  L+    R D  IY     +A+     +L AK
Sbjct: 298 PEVMAEITNFVQFPNGNAAATPLVDEAIRNDPGIYPDAATMAKIYTFPDLPAK 350