Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., Putrescine-binding periplasmic protein SpuD from Pseudomonas sp. DMC3

 Score = 72.4 bits (176), Expect = 2e-17
 Identities = 77/330 (23%), Positives = 145/330 (43%), Gaps = 24/330 (7%)

Query: 13  QMIKRFLSLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDER 72
           ++I   L   +L+   Y A    L VY W D I P  ++ +  +   +  ++   + +E 
Sbjct: 4   RLIASALCAALLSAGAY-AEERTLRVYNWFDYITPKALDDFKAQNSQTKLIYDIFDTNEA 62

Query: 73  SLLMLKSVQLPFDIMVLDNVSAFIFSRQNVFE--DLTALPNRANNDPMWLQACGTH---- 126
               L +    +D++V  NV         VF+  D + LPN  + DP  ++    +    
Sbjct: 63  LEAKLLTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWNHLDPKLMKLIEANDPGN 122

Query: 127 --AVPYFWGSVGIAY-----RKSLFDKPPTQWSEVV----DIAPAHRGRVGMLKDSVETL 175
             AVPY +G++ I +     + +L D  P    +++    +I+   +  V +L    E L
Sbjct: 123 KFAVPYMYGTILIGFNPAKIKAALGDNAPVDSWDLIFNEENISKLKQCGVALLDSPSEIL 182

Query: 176 LPALYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSG 235
             AL  L   P +       +A  LL    P++ TY +   Y+      D + +AV YSG
Sbjct: 183 PLALQHLGLDPNSKKPADYAKAEALLMKIRPYV-TYFHSSKYMADIANGD-ICVAVGYSG 240

Query: 236 D-HYSLNRFFNTQDW---DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAA 291
               + NR    ++    D  +P+    +W D +A+   + NT  A  F+++L++P + A
Sbjct: 241 SFSQAANRAKEAKNGVVVDMRLPKEGAPIWFDMLAIPKGAKNTEDAYTFINYLLQPAVIA 300

Query: 292 INAEYIRAASPNYKARALLPVEHREDLSIY 321
             ++++   +PN  A  L+    R + ++Y
Sbjct: 301 PVSDFVGYPNPNKDATGLVDPAIRNNPNLY 330