Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., polyamine ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25

 Score = 86.3 bits (212), Expect = 1e-21
 Identities = 93/364 (25%), Positives = 166/364 (45%), Gaps = 32/364 (8%)

Query: 13  QMIKRFLSLMVLNTVCYQASALE-LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD- 70
           +++K+ L L ++      + A   +++Y W D I  + +  +  KTG+      FD+++ 
Sbjct: 2   RLVKQLLPLALVAAFSSTSQAAPTVSIYNWTDYIGETTLADFQAKTGIQPVYDVFDSNET 61

Query: 71  -ERSLLMLKS---VQLPFDIMVLDNVSAFIFSRQNVFEDLTALPNRANNDPMWLQAC--- 123
            E  LL  ++   V +P +  +   V A  F +     D   LPN  N DP  L      
Sbjct: 62  LEGKLLAGRTGYDVVVPSNHFLARQVKAGAFLKL----DRAQLPNFKNLDPKLLALLEKN 117

Query: 124 ---GTHAVPYFWGSVGIAY-----RKSLFDKPPTQWS---EVVDIAPAHRGRVGMLKDSV 172
                H+VPY WG+ GI Y     ++ L       W+   E  +I   ++  V  L DS 
Sbjct: 118 DPGNAHSVPYLWGTNGIGYNVDKVKQVLGVDRIDSWAVLFEPENIKKLNQCGVAFL-DSA 176

Query: 173 ETLLPA-LYMLNASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAV 231
           + L PA L  L   P +++ +  +QA   L    P+I TY +   Y+      D + +A 
Sbjct: 177 DELFPAILNYLGKDPRSENPEDYKQAEAKLLTLRPYI-TYFHSSKYISDLANGD-ICVAF 234

Query: 232 SYSGDHY-SLNRFFNTQDW---DFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKP 287
            YSGD + + NR    ++     +S+P+    LW D +A+ + + N  +A AF+++L+ P
Sbjct: 235 GYSGDVFQAANRAKEAKNGVNIAYSIPKEGSNLWFDLLAIPADASNPKEAHAFINYLLDP 294

Query: 288 DIAAINAEYIRAASPNYKARALLPVEHREDLSIYLPEQRLAEGIIDSELSAKNLSLRAKI 347
           ++ A  +  +  A+ N  A+A +  E   +  +Y P+  L +  I +  +   + L  + 
Sbjct: 295 EVIAKVSASVGYANANPAAKAFMAPELVNNPEVYPPQAVLDKLYISTTPTPATMRLMTRA 354

Query: 348 ISSV 351
            S V
Sbjct: 355 WSKV 358