Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Pectobacterium carotovorum WPP14

 Score = 94.4 bits (233), Expect = 4e-24
 Identities = 74/305 (24%), Positives = 142/305 (46%), Gaps = 19/305 (6%)

Query: 36  LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERSLLMLKSVQLPFDIMVLDNVSAF 95
           L  Y W + + P ++E + K+TG+ V    +++++     +       +D++V       
Sbjct: 28  LYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNESMYAKLKTYKDGAYDLVVPSTYFIS 87

Query: 96  IFSRQNVFE--DLTALPNRANNDPMWLQAC----GTHAVPYFWGSVGIAYRKSLFDKPP- 148
             S++ + +  D + L N  N DP  L         +++PY WG+  I     + D    
Sbjct: 88  KMSKEGMLQKIDTSKLSNFHNLDPNLLHKSFDPNNDYSIPYIWGATAIGINHEMIDPASV 147

Query: 149 TQWSEVVDIAPAHRGRVGMLKDSVETLLPALYMLNASPITDSIDTLRQAYRLLDAANPHI 208
           T+W+++ D    ++  + +  D+ E    AL  L  S  T     +  AY+ L A  P++
Sbjct: 148 TRWADLWDTK--YKNSLLLTDDAREVFQIALRKLGYSANTTDPKEIEAAYKELQALMPNV 205

Query: 209 LTYEYVLSYVRSHPQTDN-LHMAVSYSGDHYSLNRFFNTQD--WDFSVPEGRPYLWVDCM 265
           LT+    S    +P  +  +++ + ++G  Y   +     D  W    P+     W+D +
Sbjct: 206 LTFN---SDNPGNPFIEGEVNLGMVWNGSAYVARQAGTPLDVIW----PKEGGIFWMDSL 258

Query: 266 AVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARALLPVEHREDLSIYLPEQ 325
           A+ + + N   A   +DFL++P++AA  AE I   +PN  A+ LLP E   D ++Y  ++
Sbjct: 259 AIPANAKNVDGAMKLIDFLLRPEVAAQVAETIGYPTPNLAAKKLLPPEVSGDKTLYPDDE 318

Query: 326 RLAEG 330
            +A+G
Sbjct: 319 TIAKG 323