Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 70/305 (22%), Positives = 134/305 (43%), Gaps = 19/305 (6%)

Query: 36  LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERSLLMLKSVQLPFDIMVLDNVSAF 95
           L  Y W + + P ++E + K+TG+ V    +++++     +       +D++V       
Sbjct: 29  LYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVD 88

Query: 96  IFSRQNVFE--DLTALPNRANNDPMWLQAC----GTHAVPYFWGSVGIAYRKSLFD-KPP 148
              ++ + +  D + L N  N DP  L         ++VPY WG+  I       D K  
Sbjct: 89  KMRKEGMIQKIDKSKLTNFHNLDPEMLNKPFDPNNDYSVPYIWGATAIGVNSDAIDPKTI 148

Query: 149 TQWSEVVDIAPAHRGRVGMLKDSVETLLPALYMLNASPITDSIDTLRQAYRLLDAANPHI 208
           T W+++    P ++  + +  D+ E    AL  L  S  T     +  AY  L    P++
Sbjct: 149 TSWADLWK--PEYKNSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYEELKKLMPNV 206

Query: 209 LTYEYVLSYVRSHPQTDN-LHMAVSYSGDHYSLNRFFNTQD--WDFSVPEGRPYLWVDCM 265
             +    S   ++P  +  +++ + ++G  +   +     +  W    P+     W+D +
Sbjct: 207 AAFN---SDNPANPYMEGEVNLGMVWNGSAFVARQAGTPLEVVW----PKEGGIFWMDSL 259

Query: 266 AVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARALLPVEHREDLSIYLPEQ 325
           A+ + + N   A   ++FL++PD+A   AE I   +PN  AR LL  E   D S+Y   Q
Sbjct: 260 AIPANAKNKEGALKLINFLLRPDVAKEVAETIGYPTPNLAARKLLSPEVANDKSLYPDAQ 319

Query: 326 RLAEG 330
            +++G
Sbjct: 320 TISKG 324