Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score = 85.1 bits (209), Expect = 3e-21
 Identities = 90/330 (27%), Positives = 146/330 (44%), Gaps = 33/330 (10%)

Query: 20  SLMVLNTVCYQASALELNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDE-RSLLMLK 78
           +LM ++     A    L++Y W D IAP  V  + K+TG+ V    FD+++     LM  
Sbjct: 16  ALMAVSVGTLAAEQKTLHIYNWSDYIAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAG 75

Query: 79  SVQLPFDIMVLDNVSAFIFSRQ---NVFE--DLTALPNRANNDPMWLQACGTH------A 127
           S    FD++V    SA    RQ    VF+  D + LP   N DP  L+    H      A
Sbjct: 76  STG--FDLVV---PSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFA 130

Query: 128 VPYFWGSVGIAYR----KSLFDK--PPTQWSEVV---DIAPAHRGRVGMLKDSVETLLPA 178
           +PY W + GI Y     K++  +  P   W  ++   ++       V  L    E     
Sbjct: 131 MPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATV 190

Query: 179 LYMLNASP-ITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDH 237
           L  L   P  T + D    A  LL    P+I  Y +   Y+      D + +A+ ++GD 
Sbjct: 191 LNYLGKDPNSTKADDYTGPATDLLLKLRPNI-RYFHSSQYINDLANGD-ICVAIGWAGDV 248

Query: 238 YSLNRFF----NTQDWDFSVPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAIN 293
           +  +       N  +  FS+P+     + D  A+ + + N  +A  FL++L++PD+ A  
Sbjct: 249 WQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHI 308

Query: 294 AEYIRAASPNYKARALLPVEHREDLSIYLP 323
           ++++  A+ N  A  L+  E RE+  IY P
Sbjct: 309 SDHVFYANANKAATPLVSAEVRENPGIYPP 338