Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Escherichia coli ECRC62

 Score = 80.1 bits (196), Expect = 8e-20
 Identities = 70/313 (22%), Positives = 138/313 (44%), Gaps = 19/313 (6%)

Query: 36  LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDDERSLLMLKSVQLPFDIMVLDNVSAF 95
           L  Y W + + P ++E + K+TG+ V    +++++     +       +D++V       
Sbjct: 29  LYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVD 88

Query: 96  IFSRQNVFE--DLTALPNRANNDPMWLQAC----GTHAVPYFWGSVGIAYRKSLFD-KPP 148
              ++ + +  D + L N +N DP  L         +++PY WG+  I       D K  
Sbjct: 89  KMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSV 148

Query: 149 TQWSEVVDIAPAHRGRVGMLKDSVETLLPALYMLNASPITDSIDTLRQAYRLLDAANPHI 208
           T W+++    P ++G + +  D+ E    AL  L  S  T     +  AY  L    P++
Sbjct: 149 TSWADLWK--PEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNV 206

Query: 209 LTYEYVLSYVRSHPQTDN-LHMAVSYSGDHYSLNRFFNTQD--WDFSVPEGRPYLWVDCM 265
             +    S   ++P  +  +++ + ++G  +   +     D  W    P+     W+D +
Sbjct: 207 AAFN---SDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVW----PKEGGIFWMDSL 259

Query: 266 AVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARALLPVEHREDLSIYLPEQ 325
           A+ + + N   A   ++FL++PD+A   AE I   +PN  AR LL  E   D ++Y   +
Sbjct: 260 AIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAE 319

Query: 326 RLAEGIIDSELSA 338
            +  G   +++ A
Sbjct: 320 TIKNGEWQNDVGA 332