Pairwise Alignments

Query, 359 a.a., norspermidine sensor from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., ABC transporter, substrate binding protein (putrescine) from Agrobacterium fabrum C58

 Score = 87.8 bits (216), Expect = 4e-22
 Identities = 74/309 (23%), Positives = 140/309 (45%), Gaps = 29/309 (9%)

Query: 36  LNVYLWEDTIAPSVVEAWHKKTGVSVNLFHFDNDD--ERSLLMLKS---VQLPFDIMVLD 90
           ++VY W D I P ++E + K+TG+ V    +D ++  E  LL   S   V  P    +  
Sbjct: 29  VHVYNWSDYIDPVILEDFTKETGIKVVYDVYDGNEVLETKLLAGSSGYDVVAPTSPFLAR 88

Query: 91  NVSAFIFSRQNVFEDLTALPNRANNDPMWLQACGTH------AVPYFWGSVGIAY----- 139
            + A ++ +     D + LPN  N  P   +    +      AV Y WG+ GI Y     
Sbjct: 89  QIKAGVYQKL----DKSKLPNLKNAWPDITERLAKYDPGNEYAVNYMWGTTGIGYNVAKV 144

Query: 140 RKSLFDKPPTQWSEVVDIAPAHRGR---VGMLKDSVETLLPALYMLNASPITDSIDTLRQ 196
           + +L D P   W  +     A + +   + +L  S ET   A+  L  +P +     L  
Sbjct: 145 KAALGDVPVDSWDVLFKPENAEKLKSCGINILDASDETFAIAMNYLGKNPDSKETADLEA 204

Query: 197 AYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHYSLN----RFFNTQDWDFS 252
              +     P++ T+     Y+      D   +++ +SGD            N  + ++ 
Sbjct: 205 GGEVYSKIRPYVKTFNSS-PYINDLANGDTC-ISIGWSGDILQAKTRAEEAKNGVEVNYV 262

Query: 253 VPEGRPYLWVDCMAVNSVSPNTVQAKAFLDFLMKPDIAAINAEYIRAASPNYKARALLPV 312
           +P+   Y+W+D  A+ + + N  +A AF++++MKP++AA  ++Y++ A+ N  ++AL+  
Sbjct: 263 IPKEGTYIWMDSFAIPADAKNVDEAHAFINYMMKPEVAAKASDYVQYANGNLPSQALMDP 322

Query: 313 EHREDLSIY 321
              ++  +Y
Sbjct: 323 SVAKNPGVY 331