Pairwise Alignments

Query, 558 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 565 a.a., predicted sensory kinase in two-component system with YpdB (NCBI) from Escherichia coli BW25113

 Score =  239 bits (611), Expect = 2e-67
 Identities = 168/571 (29%), Positives = 300/571 (52%), Gaps = 36/571 (6%)

Query: 2   DLILSLLQQMCVYLVLAYMLSKTPIFIPLLNISGRFDHKI-SVYVLFSLFCIMGTYFGLQ 60
           +++L++  +  + L+  + L +  +F  LL+ S     ++ +V  +FSLF +  T+ G+ 
Sbjct: 6   NMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSLFALFSTWSGVP 65

Query: 61  INDAIANTRAIGAVMGGLFGGPVIGFAVGLTGGLHRYTL--GGFTDLACAISTTAEGLIG 118
           +  ++ N R I  + GG+  GP +G   G+  G+HRY +  GG T + C I++   G I 
Sbjct: 66  VEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAIPCFITSILAGCIS 125

Query: 119 GLLHTYLLRKGKGKLLFSPSIVFAVTLFAEIVQMLIILVVAKPFEQSYALVSTIAAPMII 178
           G ++  + +  + +      +     +  E + M++++V A        +VS I  PMI+
Sbjct: 126 GWINLKIPKAQRWR------VGILGGMLCETLTMILVIVWAPTTALGIDIVSKIGIPMIL 179

Query: 179 ANSVGAALFMSILLDRKTIFEEYSATFSRRA---LNIAERSVGILAAGFNPENANKIARI 235
               G+     I+L  +++  E  A+ +R+A   L+IA +++ +     N E+  K+  I
Sbjct: 180 ----GSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRH-VNSESLRKVCEI 234

Query: 236 VYEQTNVGAVSITDREKILAFVGIGDDHHKPNTPISSQSTLDAINRNAIIYLDGKEHPYQ 295
           + +  +  AV+IT+ + +LA+VG+G+ +++      S +T  A+N   II  +  E    
Sbjct: 235 IRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQAMNYGKIIIKNNDE---- 290

Query: 296 CSLSPTCKLGSALIIPLRAGDRVIGTIKLYEPKRKLFSTINMSMAQGIAQLLSSQILYGE 355
                T ++ S L+IPL     V GT+K+Y       ++    MA G++Q++S+Q+    
Sbjct: 291 --AHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAVGLSQIISTQLEVSR 348

Query: 356 YQQKQILLSRAEIKLLQAQVNPHFLFNALNTISAVIRREPDKARELILHLSQFFRSNLK- 414
            +Q + + ++AE++ LQ+++NPHFLFNALN IS+ IR  PD AR+LI +LS++ R N++ 
Sbjct: 349 AEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIEL 408

Query: 415 QNVETVTLREELAHVNAYLTIEKARFSDRLDVEIAIDDALLERNVPSFTLQPLVENAIKH 474
           ++ E + +++EL  +  Y+ IE+ARF D+L V   ID+  +   +PS  +QPLVENAI H
Sbjct: 409 KDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEE-VNCCIPSLLIQPLVENAIVH 467

Query: 475 GTSNLLEAGKVRIYSEVVEGGMRVVVEDNAGLYQP------PSEDYDG--LGMQIVEKRL 526
           G       G V I        +R+ V D      P       + +  G  +G+  V  R+
Sbjct: 468 GIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHHRV 527

Query: 527 TNKFGLKSGLQIEVAPQEYTRMSFVIPQQGT 557
              +G   GL I    +  T ++F IP Q T
Sbjct: 528 KLLYG--EGLHIR-RLEPGTEIAFYIPNQRT 555