Pairwise Alignments

Query, 237 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 248 a.a., LytTR family DNA-binding domain-containing protein from Variovorax sp. OAS795

 Score =  105 bits (262), Expect = 8e-28
 Identities = 80/246 (32%), Positives = 123/246 (50%), Gaps = 17/246 (6%)

Query: 2   LSALLIDDERFAREELAELLAE--SGQIEVIGQASNAIEGLKKINQLKPDVVFLDIQMPQ 59
           L  L++DDE  AR  L  LL E  S   +V+ +A+   E    +  +  D+V LD+ MP 
Sbjct: 3   LKTLIVDDEALARSRLRTLLRECRSPAADVVAEAAQGAEAQAHLQSMALDLVLLDVHMPG 62

Query: 60  ISGIELLSML-DPETMPEVVFVTAYDQYALQAFEDNAFDYLLKPVDTERLAKTVQ---RL 115
           + GIE+   L D    P VVFVTA+  +A+ AF+ +A DYL KPV  ERL + +Q   R 
Sbjct: 63  VDGIEVARALRDRSDAPAVVFVTAHAAHAVTAFDLDAVDYLTKPVRAERLQQALQKAERF 122

Query: 116 LRQHKKSDYSPLTQPSLDQIPCTGLNRIVLLPINEVEFAYSDISGVNVQTAQQKATSQLT 175
           L++ +      + +  L Q       R   +P++EV +  S+   + V+TA +      +
Sbjct: 123 LKERRALQAGAMQESVLIQ----DRGRAERVPLSEVLYLKSEYKYLTVRTASRSHILDGS 178

Query: 176 LKVLEEK--TALVRCHRQYLVNLKAIREIKLLEN-----GLAEMITHAGHKVPVSRRYLK 228
           L   EE+     +R HR  LV   AIR ++  ++     G A  +      V VSRR L 
Sbjct: 179 LNEFEERYPALFLRVHRNALVARSAIRALEKYDDGEDAEGWALRLDAIPEPVAVSRRQLA 238

Query: 229 ELKEML 234
            ++E+L
Sbjct: 239 AVREVL 244