Pairwise Alignments

Query, 237 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score =  250 bits (639), Expect = 2e-71
 Identities = 127/238 (53%), Positives = 174/238 (73%), Gaps = 3/238 (1%)

Query: 1   MLSALLIDDERFAREELAELLAESGQIEVIGQASNAIEGLKKINQLKPDVVFLDIQMPQI 60
           M+  L++DDE  ARE L   L E   IE++G+ SNA+EG+  +++L+PDV+FLDIQMP+I
Sbjct: 1   MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRI 60

Query: 61  SGIELLSMLDPETMPEVVFVTAYDQYALQAFEDNAFDYLLKPVDTERLAKTVQRLLRQHK 120
           SG+E++ MLDPE  P +VF+TA+D+YA++AFE++AFDYLLKP+D  RL KT+ RL ++  
Sbjct: 61  SGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQERS 120

Query: 121 KSDYS--PLTQPSLDQIPCTGLNRIVLLPINEVEFAYSDISGVNVQTAQQK-ATSQLTLK 177
           K D S  P  Q +L  IPCTG +RI LL + +V F  S +SGV V + + K   ++LTL+
Sbjct: 121 KQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLR 180

Query: 178 VLEEKTALVRCHRQYLVNLKAIREIKLLENGLAEMITHAGHKVPVSRRYLKELKEMLG 235
            LE +T L+RCHRQYLVNL  ++EI+L +NG AE+I   G  VPVSRRYLK LKE +G
Sbjct: 181 TLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIG 238