Pairwise Alignments

Query, 494 a.a., carbon starvation protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 716 a.a., putative carbon starvation protein (VIMSS) from Escherichia coli BW25113

 Score =  104 bits (260), Expect = 9e-27
 Identities = 97/355 (27%), Positives = 149/355 (41%), Gaps = 80/355 (22%)

Query: 2   LWFLTC-VAALVGGYFIYGAFV-EKVFGINEKRQTPAHTKTDGVDYVPMSTPKVYLVQLL 59
           LW +   V+  +  Y  Y  ++ +KV  ++  R TPA    DG++YVP +   ++     
Sbjct: 37  LWIVVASVSVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFA 96

Query: 60  NIAGVGPIFGPIMGALYG-PAAMLWIVVGCIFAGAVHDYFSGMLSIRNGGASVPSITGRY 118
            IAG GP+ GP++ A  G     LW++ G + AGAV D+    +S R  GAS+  +    
Sbjct: 97  AIAGAGPLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEE 156

Query: 119 LGN--------GAKHFMNIFAIVLLLLVGVVFVSAPAGMITNLINQQTDFTVSMTTMVVI 170
           +G         G    M I   VL L+V      +P G+          FTV  T  + +
Sbjct: 157 MGPVPGTIALFGCFLIMIIILAVLALIVVKALAESPWGV----------FTVCSTVPIAL 206

Query: 171 IFAYYIL---------ATIVPVDKIIGRFY--------PLFGALLIFMSVGLMTAI---A 210
               Y+           +++ +  ++   Y        P +G  L F    +  A+   A
Sbjct: 207 FMGIYMRFIRPGRVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYA 266

Query: 211 FSS-------------------EHQVLGGFEISDMVKNLNP------------NDMPLW- 238
           F S                   +  V+ G  +  +V  LNP               PLW 
Sbjct: 267 FVSALLPVWLILAPRDYLATFLKIGVIVGLALGIVV--LNPELKMPAMTQYIDGTGPLWK 324

Query: 239 ----PALFITIACGAISGFHA-TQSPLMARCMENEKNGRFVFYGAMIGEGIIALI 288
               P LFITIACGA+SGFHA   S    + + NE + RF+ YGAM+ E  +A++
Sbjct: 325 GALFPFLFITIACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIM 379



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 391 IWRYFGFANQ--ATAVMMLWTATAYLMRHNKLHWICTVPALFMTTVCISFIL 440
           +W  FG +NQ  A   ++L T     M+  +  W+  VPA+++  +C ++ L
Sbjct: 565 LWPLFGISNQMLAAVALVLGTVVLIKMKRTQYIWVTVVPAVWL-LICTTWAL 615